Package: AAbAtlas 0.1.0
AAbAtlas: Access the Antibodyome Atlas of Autoantibody Profiling Datasets
Client for the antibodyome-atlas, a curated catalog of autoantibody profiling datasets and papers (protein/antigen microarrays and related platforms) drawn from public repositories such as GEO and ArrayExpress. Metadata is fetched live from the atlas's GitHub-hosted JSON manifest, so results always reflect the latest curated data (or a pinned release, for reproducibility). Provides functions to list and filter datasets, resolve citations and related records, and download the underlying data files.
Authors:
AAbAtlas_0.1.0.tar.gz
AAbAtlas_0.1.0.zip(r-4.7-any)AAbAtlas_0.1.0.zip(r-4.6-any)AAbAtlas_0.1.0.zip(r-4.5-any)
AAbAtlas_0.1.0.tgz(r-4.6-any)AAbAtlas_0.1.0.tgz(r-4.5-any)
AAbAtlas_0.1.0.tar.gz(r-4.7-any)AAbAtlas_0.1.0.tar.gz(r-4.6-any)
AAbAtlas_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
AAbAtlas/json (API)
| # Install 'AAbAtlas' in R: |
| install.packages('AAbAtlas', repos = c('https://ahcm088.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ahcm088/antibodyome-atlas/issues
Last updated from:6ea6804aef. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 120 | ||
| source / vignettes | OK | 167 | ||
| linux-release | OK | 149 | ||
| macos-release | OK | 106 | ||
| macos-oldrel | OK | 112 | ||
| windows-devel | OK | 60 | ||
| windows-release | OK | 68 | ||
| windows-oldrel | OK | 62 | ||
| wasm-release | OK | 82 |
Exports:aab_citationaab_datasetaab_datasetsaab_downloadaab_link_statusaab_platformsaab_publications
Dependencies:askpassclicurlgluehttr2jsonlitelifecyclemagrittropensslpillarpkgconfigR6rlangsystibbleutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get the citation for a dataset, ready to paste into a manuscript | aab_citation |
| Get a single dataset record, with its publication and platforms resolved | aab_dataset |
| List all datasets/papers in the atlas | aab_datasets |
| Download a dataset's data file | aab_download |
| List the link-reachability check history | aab_link_status |
| List all assay platforms referenced by atlas datasets | aab_platforms |
| List all publications referenced by atlas datasets | aab_publications |
